I am sure the answer is fairly straightforward, but I have struggled to find the specific method of specifying the location of the MPI executables for parallel compilation.
I am using a virtual Ubuntu 15.04 machine for compilation, with the standard python compilation route. The verbose output is below, but the general issue is I am not sure of the syntax of pointing Python in the right direction.
Thank you in advance for any help
Make file used:
##########################################################################
Makefile.
The present Makefile is a pure configuration file, in which
you can select compilation options. Compilation dependencies
are managed automatically through the Python library SConstruct.
If you don’t have Python, or if compilation doesn’t work for other
reasons, consult the Palabos user’s guide for instructions on manual
compilation.
##########################################################################
USE: multiple arguments are separated by spaces.
For example: projectFiles = file1.cpp file2.cpp
optimFlags = -O -finline-functions
Leading directory of the Palabos source code
palabosRoot = …/…/…
Name of source files in current directory to compile and link with Palabos
projectFiles = damBreak3d.cpp
projectFiles = fallingDroplet.cpp
Set optimization flags on/off
optimize = true
Set debug mode and debug flags on/off
debug = true
Set profiling flags on/off
profile = false
Set MPI-parallel mode on/off (parallelism in cluster-like environment)
MPIparallel = true
Set SMP-parallel mode on/off (shared-memory parallelism)
SMPparallel = true
Decide whether to include calls to the POSIX API. On non-POSIX systems,
including Windows, this flag must be false, unless a POSIX environment is
emulated (such as with Cygwin).
usePOSIX = true
Path to external libraries (other than Palabos)
libraryPaths = “/usr/bin/”
Path to inlude directories (other than Palabos)
includePaths = “/usr/bin/”
Dynamic and static libraries (other than Palabos)
libraries = “/usr/bin/”
Compiler to use without MPI parallelism
serialCXX = g++
Compiler to use with MPI parallelism
parallelCXX = mpiexec
General compiler flags (e.g. -Wall to turn on all warnings on g++)
compileFlags = -Wall -Wnon-virtual-dtor
General linker flags (don’t put library includes into this flag)
linkFlags =
Compiler flags to use when optimization mode is on
optimFlags = -O
Compiler flags to use when debug mode is on
debugFlags = -g
Compiler flags to use when profile mode is on
profileFlags = -pg
##########################################################################
All code below this line is just about forwarding the options
to SConstruct. It is recommended not to modify anything there.
##########################################################################
SCons = $(palabosRoot)/scons/scons.py -j 6 -f $(palabosRoot)/SConstruct
SConsArgs = palabosRoot=$(palabosRoot)
projectFiles="$(projectFiles)"
optimize=$(optimize)
debug=$(debug)
profile=$(profile)
MPIparallel=$(MPIparallel)
SMPparallel=$(SMPparallel)
usePOSIX=$(usePOSIX)
serialCXX=$(serialCXX)
parallelCXX=$(parallelCXX)
compileFlags="$(compileFlags)"
linkFlags="$(linkFlags)"
optimFlags="$(optimFlags)"
debugFlags="$(debugFlags)"
profileFlags="$(profileFlags)"
libraryPaths="$(libraryPaths)"
includePaths="$(includePaths)"
libraries="$(libraries)"
compile:
python $(SCons) $(SConsArgs)
clean:
python $(SCons) -c $(SConsArgs)
/bin/rm -vf find $(palabosRoot) -name '*~'
Command line errors:
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ make
python …/…/…/scons/scons.py -j 6 -f …/…/…/SConstruct palabosRoot=…/…/… projectFiles=“fallingDroplet.cpp” optimize=true debug=true profile=false MPIparallel=true SMPparallel=true usePOSIX=true serialCXX=g++ parallelCXX=mpicxx compileFlags="-Wall -Wnon-virtual-dtor" linkFlags="" optimFlags="-O" debugFlags="-g" profileFlags="-pg" libraryPaths="" includePaths="" libraries=""
scons: Reading SConscript files …
scons: done reading SConscript files.
scons: Building targets …
mpicxx -o fallingDroplet.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries fallingDroplet.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -
…
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/home/nicholas/Documents/oPENmpi /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/home/nicholas/Documents/oPENmpi /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/home/nicholas/Documents/oPENmpi /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/home/nicholas/Documents/oPENmpi /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.cpp
scons: *** [damBreak3d.o] Error 127
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.o] Error 127
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o] Error 127
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o] Error 127
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o] Error 127
sh: 1: mpicxx: not found
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o] Error 127
scons: building terminated because of errors.
Makefile:88: recipe for target ‘compile’ failed
make: *** [compile] Error 2
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ make
python …/…/…/scons/scons.py -j 6 -f …/…/…/SConstruct palabosRoot=…/…/… projectFiles=“damBreak3d.cpp” optimize=true debug=true profile=false MPIparallel=true SMPparallel=true usePOSIX=true serialCXX=g++ parallelCXX=mpicxx compileFlags="-Wall -Wnon-virtual-dtor" linkFlags="" optimFlags="-O" debugFlags="-g" profileFlags="-pg" libraryPaths="/home/nicholas/Documents/oPENmpi/openmpi-1.8.5" includePaths="/home/nicholas/Documents/oPENmpi/openmpi-1.8.5" libraries="//home/nicholas/Documents/oPENmpi/openmpi-1.8.5"
scons: Reading SConscript files …
scons: done reading SConscript files.
scons: Building targets …
mpicxx -o damBreak3d.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/home/nicholas/Documents/oPENmpi/openmpi-1.8.5 damBreak3d.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/home/nicholas/Documents/oPENmpi/openmpi-1.8.5 /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/home/nicholas/Documents/oPENmpi/openmpi-1.8.5 /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/home/nicholas/Documents/oPENmpi/openmpi-1.8.5 /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/home/nicholas/Documents/oPENmpi/openmpi-1.8.5 /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.cpp
sh: 1: mpicxx: not found
mpicxx -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/home/nicholas/Documents/oPENmpi/openmpi-1.8.5 /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.cpp
scons: *** [damBreak3d.o] Error 127
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.o] Error 127
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o] Error 127
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o] Error 127
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o] Error 127
sh: 1: mpicxx: not found
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o] Error 127
scons: building terminated because of errors.
Makefile:88: recipe for target ‘compile’ failed
make: *** [compile] Error 2
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ make
python …/…/…/scons/scons.py -j 6 -f …/…/…/SConstruct palabosRoot=…/…/… projectFiles=“damBreak3d.cpp” optimize=true debug=true profile=false MPIparallel=true SMPparallel=true usePOSIX=true serialCXX=g++ parallelCXX=mpiexec compileFlags="-Wall -Wnon-virtual-dtor" linkFlags="" optimFlags="-O" debugFlags="-g" profileFlags="-pg" libraryPaths="/etc/alternatives/mpiexec" includePaths="/etc/alternatives/mpiexec" libraries="/etc/alternatives/mpiexec"
scons: Reading SConscript files …
scons: done reading SConscript files.
scons: Building targets …
scons: *** [damBreak3d] TypeError File /etc/alternatives/mpiexec found where directory expected.' trying to evaluate${_concat(LIBDIRPREFIX, LIBPATH, LIBDIRSUFFIX, env, RDirs, TARGET, SOURCE)}’
scons: building terminated because of errors.
Makefile:88: recipe for target ‘compile’ failed
make: *** [compile] Error 2
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ clc
No command ‘clc’ found, but there are 21 similar ones
clc: command not found
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ clear
[3;J
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ make
python …/…/…/scons/scons.py -j 6 -f …/…/…/SConstruct palabosRoot=…/…/… projectFiles=“damBreak3d.cpp” optimize=true debug=true profile=false MPIparallel=true SMPparallel=true usePOSIX=true serialCXX=g++ parallelCXX=mpiexec compileFlags="-Wall -Wnon-virtual-dtor" linkFlags="" optimFlags="-O" debugFlags="-g" profileFlags="-pg" libraryPaths="/etc/alternatives/mpiexec" includePaths="/etc/alternatives/mpiexec" libraries="/etc/alternatives/mpiexec"
scons: Reading SConscript files …
scons: done reading SConscript files.
scons: Building targets …
scons: *** [damBreak3d] TypeError File /etc/alternatives/mpiexec found where directory expected.' trying to evaluate${_concat(LIBDIRPREFIX, LIBPATH, LIBDIRSUFFIX, env, RDirs, TARGET, SOURCE)}’
scons: building terminated because of errors.
Makefile:88: recipe for target ‘compile’ failed
make: *** [compile] Error 2
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ clear
[3;J
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ make
python …/…/…/scons/scons.py -j 6 -f …/…/…/SConstruct palabosRoot=…/…/… projectFiles=“damBreak3d.cpp” optimize=true debug=true profile=false MPIparallel=true SMPparallel=true usePOSIX=true serialCXX=g++ parallelCXX=mpiexec compileFlags="-Wall -Wnon-virtual-dtor" linkFlags="" optimFlags="-O" debugFlags="-g" profileFlags="-pg" libraryPaths="/etc/alternatives/" includePaths="/etc/alternatives/" libraries="/etc/alternatives/"
scons: Reading SConscript files …
scons: done reading SConscript files.
scons: Building targets …
mpiexec -o damBreak3d.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/etc/alternatives damBreak3d.cpp
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/etc/alternatives /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.cpp
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/etc/alternatives /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.cpp
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/etc/alternatives /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.cpp
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/etc/alternatives /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.cpp
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/etc/alternatives /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.cpp
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o] Error 133
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o] Error 133
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o] Error 133
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
scons: *** [damBreak3d.o] Error 133
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.o] Error 133
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o] Error 133
scons: building terminated because of errors.
Makefile:88: recipe for target ‘compile’ failed
make: *** [compile] Error 2
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ clear
[3;J
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ make
python …/…/…/scons/scons.py -j 6 -f …/…/…/SConstruct palabosRoot=…/…/… projectFiles=“damBreak3d.cpp” optimize=true debug=true profile=false MPIparallel=true SMPparallel=true usePOSIX=true serialCXX=g++ parallelCXX=mpiexec compileFlags="-Wall -Wnon-virtual-dtor" linkFlags="" optimFlags="-O" debugFlags="-g" profileFlags="-pg" libraryPaths="/usr/bin/" includePaths="/usr/bin/" libraries="/usr/bin/"
scons: Reading SConscript files …
scons: done reading SConscript files.
scons: Building targets …
mpiexec -o damBreak3d.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin damBreak3d.cpp
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.cpp
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.cpp
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.cpp
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.cpp
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.cpp
scons: *** [damBreak3d.o] Error 133
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.o] Error 133
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o] Error 133
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o] Error 133
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o] Error 133
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o] Error 133
scons: building terminated because of errors.
Makefile:88: recipe for target ‘compile’ failed
make: *** [compile] Error 2
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ clear
[3;J
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$ make
python …/…/…/scons/scons.py -j 6 -f …/…/…/SConstruct palabosRoot=…/…/… projectFiles=“damBreak3d.cpp” optimize=true debug=true profile=false MPIparallel=true SMPparallel=true usePOSIX=true serialCXX=g++ parallelCXX=mpiexec compileFlags="-Wall -Wnon-virtual-dtor" linkFlags="" optimFlags="-O" debugFlags="-g" profileFlags="-pg" libraryPaths=""/usr/bin/"" includePaths=""/usr/bin/"" libraries=""/usr/bin/""
scons: Reading SConscript files …
scons: done reading SConscript files.
scons: Building targets …
mpiexec -o damBreak3d.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin damBreak3d.cpp
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.cpp
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.cpp
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.cpp
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.cpp
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
mpiexec -o /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o -c -Wall -Wnon-virtual-dtor -O -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -DPLB_SMP_PARALLEL -DPLB_USE_POSIX -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/src -I/home/nicholas/Documents/Palabos/palabos-v1.5r1/externalLibraries -I/usr/bin /home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.cpp
scons: *** [damBreak3d.o] Error 133
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/utilIO_2D.o] Error 133
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/multiBlockReader2D.o] Error 133
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_2D.o] Error 133
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/serializerIO_3D.o] Error 133
mpiexec was unable to launch the specified application as it could not find an executable:
Executable: -o
Node: nicholas-VirtualBox
while attempting to start process rank 0.
scons: *** [/home/nicholas/Documents/Palabos/palabos-v1.5r1/src/io/parallelIO.o] Error 133
scons: building terminated because of errors.
Makefile:88: recipe for target ‘compile’ failed
make: *** [compile] Error 2
nicholas@nicholas-VirtualBox:~/Documents/Palabos/palabos-v1.5r1/examples/showCases/vofMultiPhase$