Dear Palabos experts,
I tried to compile pythonic/src under OpenSUSE 12.1 64 bits OS and got errors (attached below). But, I have no problem “make” the the tutorials in the tutorial_1 directoy. I can even run the tutorial_1 files in parallel using openmpi. Any suggestion on the phthonic/src error? Do I really need to compile the python library?
Thanks!
Pei-Ying
cd compilePalabos; make
make[1]: Entering directory /home/phsieh/palabos/palabos-v1.0r1/pythonic/src/compilePalabos' python /home/phsieh/palabos/palabos-v1.0r1/pythonic/src/compilePalabos/../../..//scons/scons.py -j 4 -f /home/phsieh/palabos/palabos-v1.0r1/pythonic/src/compilePalabos/../../..//SConstruct palabosRoot=/home/phsieh/palabos/palabos-v1.0r1/pythonic/src/compilePalabos/../../../ projectFiles="dummyMain.cpp" precompiled=true optimize=true debug=false profile=false MPIparallel=true SMPparallel=false usePOSIX=true serialCXX=g++ parallelCXX=mpicxx dynamicLibrary=true compileFlags="" linkFlags="" optimFlags="-O3" debugFlags="-g" profileFlags="-pg" libraryPaths="" includePaths="" libraries="" scons: Reading SConscript files ... scons: done reading SConscript files. scons: Building targets ... scons:
.’ is up to date.
scons: done building targets.
make[1]: Leaving directory `/home/phsieh/palabos/palabos-v1.0r1/pythonic/src/compilePalabos’
bash ./preprocess
~/palabos/palabos-v1.0r1/pythonic/src/swig ~/palabos/palabos-v1.0r1/pythonic/src
Swig-file preparation for module core
Swig-file specialization for module int_block
Swig-file specialization for module double_block
Swig-file specialization for module float_block
Swig-file specialization for module double_d2q9
Swig-file specialization for module float_d2q9
Swig-file specialization for module double_d3q19
Swig-file specialization for module float_d3q19
~/palabos/palabos-v1.0r1/pythonic/src
python /home/phsieh/palabos/palabos-v1.0r1/./scons/scons.py -j 4 -f /home/phsieh/palabos/palabos-v1.0r1/./pythonic/src//SConstruct palabosRoot=/home/phsieh/palabos/palabos-v1.0r1/. pypalRoot=/home/phsieh/palabos/palabos-v1.0r1/./pythonic/src/ optimize=true debug=true profile=false MPIparallel=true serialCXX=g++ parallelCXX=mpicxx compileFlags="" optimFlags="-O3" debugFlags="-g" profileFlags="-pg" includePaths="/usr/lib64/python2.4/site-packages/numpy/core/include/" linkFlags=""
scons: Reading SConscript files …
scons: done reading SConscript files.
scons: Building targets …
swig -o swig/core/pre_processed/core_wrap.cc -classic -python -c++ swig/core/pre_processed/core.i
swig -o swig/block/double/block_wrap.cc -classic -python -c++ swig/block/double/block.i
swig -o swig/blockLattice2d/double_d2q9/blockLattice2d_wrap.cc -classic -python -c++ swig/blockLattice2d/double_d2q9/blockLattice2d.i
swig -o swig/blockLattice3d/double_d3q19/blockLattice3d_wrap.cc -classic -python -c++ swig/blockLattice3d/double_d3q19/blockLattice3d.i
swig/core/pre_processed/plbInit.i:19: Warning 324: Named nested template instantiations not supported. Processing as if no name was given to %template().
swig/core/pre_processed/plbInit.i:20: Warning 324: Named nested template instantiations not supported. Processing as if no name was given to %template().
swig/core/pre_processed/plbInit.i:21: Warning 324: Named nested template instantiations not supported. Processing as if no name was given to %template().
mpicxx -o swig/blockLattice2d/double_d2q9/blockLattice2d_wrap.os -c -O3 -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -fPIC -I/usr/include/python2.7 -I/home/phsieh/palabos/palabos-v1.0r1/src -I/home/phsieh/palabos/palabos-v1.0r1/externalLibraries -I. -I/usr/lib64/python2.4/site-packages/numpy/core/include swig/blockLattice2d/double_d2q9/blockLattice2d_wrap.cc
mpicxx -o swig/blockLattice3d/double_d3q19/blockLattice3d_wrap.os -c -O3 -g -DPLB_DEBUG -DPLB_MPI_PARALLEL -fPIC -I/usr/include/python2.7 -I/home/phsieh/palabos/palabos-v1.0r1/src -I/home/phsieh/palabos/palabos-v1.0r1/externalLibraries -I. -I/usr/lib64/python2.4/site-packages/numpy/core/include swig/blockLattice3d/double_d3q19/blockLattice3d_wrap.cc
swig/blockLattice2d/double_d2q9/blockLattice2d_wrap.cc:3066:31: fatal error: numpy/arrayobject.h: No such file or directory
compilation terminated.
scons: *** [swig/blockLattice2d/double_d2q9/blockLattice2d_wrap.os] Error 1
swig/blockLattice3d/double_d3q19/blockLattice3d_wrap.cc:3066:31: fatal error: numpy/arrayobject.h: No such file or directory
compilation terminated.
scons: *** [swig/blockLattice3d/double_d3q19/blockLattice3d_wrap.os] Error 1
swig/core/pre_processed/plbInit.i:19: Warning 519: %template() contains no name. Template method ignored: plb::global::MainArgv::read< int >(int &)
swig/core/pre_processed/plbInit.i:20: Warning 519: %template() contains no name. Template method ignored: plb::global::MainArgv::read< double >(double &)
swig/core/pre_processed/plbInit.i:21: Warning 519: %template() contains no name. Template method ignored: plb::global::MainArgv::ad< std::string >(std::string &)
scons: building terminated because of errors.
make: *** [compilation] Error 2