Hi
I’m completely new to Palabos.
Today i tried to run Palabos tutorial 1 in my Ubuntu 12.04 terminal. After using make command it made the file tutorial_1_1 to be run (as explained in tutorial link.) But suddenly i faced this strange ugly error message : (I`ve brought the whole error message in order to clarify everything.)
Could you please kindly help me to know what’s wrong and how can i run this tutorial?
Thanx
[[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 357
[alireza-N55:09230] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 230
[alireza-N55:09230] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../orte/runtime/orte_init.c at line 132
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
orte_ess_set_name failed
--> Returned value A system-required executable either could not be found or was not executable by this user (-127) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):
ompi_mpi_init: orte_init failed
--> Returned "A system-required executable either could not be found or was not executable by this user" (-127) instead of "Success" (0)
--------------------------------------------------------------------------
*** The MPI_Init() function was called before MPI_INIT was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[alireza-N55:9230] Abort before MPI_INIT completed successfully; not able to guarantee that all other processes were killed!
Hi all,
I am also completely new to Palabos.
I am trying to run Palabos tutorial 1 in my MacOSX 10.8.5.
After typing “make” in the tutorial folder, I get this error:
In file included from tutorial_1_1.cpp:29:
In file included from /Users/Alessio/Downloads/palabos-v1.4r1/src/palabos2D.hh:27:
In file included from /Users/Alessio/Downloads/palabos-v1.4r1/src/core/headers2D.hh:29:
/Users/Alessio/Downloads/palabos-v1.4r1/src/core/plbComplex.hh:69:17: error:
reference to non-static member function must be called
return sqrt(sqrModulus);
The complete log is:
python ../../../scons/scons.py -j 2 -f ../../../SConstruct palabosRoot=../../.. projectFiles="tutorial_1_1.cpp" optimize=true debug=false profile=false MPIparallel=true SMPparallel=false usePOSIX=true serialCXX=g++ parallelCXX=mpicxx compileFlags="-DPLB_MAC_OS_X" linkFlags="" optimFlags="-O3" debugFlags="-g" profileFlags="-pg" libraryPaths="" includePaths="" libraries=""
scons: Reading SConscript files ...
scons: done reading SConscript files.
scons: Building targets ...
mpicxx -o tutorial_1_1.o -c -DPLB_MAC_OS_X -O3 -DPLB_MPI_PARALLEL -DPLB_USE_POSIX -I/Users/Alessio/Downloads/palabos-v1.4r1/src -I/Users/Alessio/Downloads/palabos-v1.4r1/externalLibraries tutorial_1_1.cpp
mpicxx -o /Users/Alessio/Downloads/palabos-v1.4r1/src/algorithm/basicAlgorithms.o -c -DPLB_MAC_OS_X -O3 -DPLB_MPI_PARALLEL -DPLB_USE_POSIX -I/Users/Alessio/Downloads/palabos-v1.4r1/src -I/Users/Alessio/Downloads/palabos-v1.4r1/externalLibraries /Users/Alessio/Downloads/palabos-v1.4r1/src/algorithm/basicAlgorithms.cpp
mpicxx -o /Users/Alessio/Downloads/palabos-v1.4r1/src/algorithm/statistics.o -c -DPLB_MAC_OS_X -O3 -DPLB_MPI_PARALLEL -DPLB_USE_POSIX -I/Users/Alessio/Downloads/palabos-v1.4r1/src -I/Users/Alessio/Downloads/palabos-v1.4r1/externalLibraries /Users/Alessio/Downloads/palabos-v1.4r1/src/algorithm/statistics.cpp
mpicxx -o /Users/Alessio/Downloads/palabos-v1.4r1/src/atomicBlock/atomicBlock2D.o -c -DPLB_MAC_OS_X -O3 -DPLB_MPI_PARALLEL -DPLB_USE_POSIX -I/Users/Alessio/Downloads/palabos-v1.4r1/src -I/Users/Alessio/Downloads/palabos-v1.4r1/externalLibraries /Users/Alessio/Downloads/palabos-v1.4r1/src/atomicBlock/atomicBlock2D.cpp
In file included from tutorial_1_1.cpp:29:
In file included from /Users/Alessio/Downloads/palabos-v1.4r1/src/palabos2D.hh:27:
In file included from /Users/Alessio/Downloads/palabos-v1.4r1/src/core/headers2D.hh:29:
/Users/Alessio/Downloads/palabos-v1.4r1/src/core/plbComplex.hh:69:17: error:
reference to non-static member function must be called
return sqrt(sqrModulus);
^~~~~~~~~~
mpicxx -o /Users/Alessio/Downloads/palabos-v1.4r1/src/atomicBlock/atomicBlock3D.o -c -DPLB_MAC_OS_X -O3 -DPLB_MPI_PARALLEL -DPLB_USE_POSIX -I/Users/Alessio/Downloads/palabos-v1.4r1/src -I/Users/Alessio/Downloads/palabos-v1.4r1/externalLibraries /Users/Alessio/Downloads/palabos-v1.4r1/src/atomicBlock/atomicBlock3D.cpp
In file included from tutorial_1_1.cpp:29:
In file included from /Users/Alessio/Downloads/palabos-v1.4r1/src/palabos2D.hh:36:
In file included from /Users/Alessio/Downloads/palabos-v1.4r1/src/multiGrid/headers2D.hh:37:
/Users/Alessio/Downloads/palabos-v1.4r1/src/multiGrid/gridRefinementDynamics.hh:61:19: warning:
binding reference member 'timeCounter' to a temporary value
[-Wdangling-field]
timeCounter(0),
^
/Users/Alessio/Downloads/palabos-v1.4r1/src/multiGrid/gridRefinementDynamics.h:76:24: note:
reference member declared here
TimeCounter const& timeCounter;
^
mpicxx -o /Users/Alessio/Downloads/palabos-v1.4r1/src/atomicBlock/atomicBlockOperations2D.o -c -DPLB_MAC_OS_X -O3 -DPLB_MPI_PARALLEL -DPLB_USE_POSIX -I/Users/Alessio/Downloads/palabos-v1.4r1/src -I/Users/Alessio/Downloads/palabos-v1.4r1/externalLibraries /Users/Alessio/Downloads/palabos-v1.4r1/src/atomicBlock/atomicBlockOperations2D.cpp
1 warning and 1 error generated.
scons: *** [tutorial_1_1.o] Error 1
scons: building terminated because of errors.
make: *** [compile] Error 2
Is it something related to the compiler? I have Xcode and the developer tools installed, but I have to admit I am also quite new to c++, because I have mostly worked with c.
Could you kindly help me to solve the problem? I apologize in advance if the issue is a really trivial or stupid one.
There is a bug which has been fixed, but we have not yet made a release since then, so you will have to go and fix it yourself manually. I apologize for this inconvenience.
Please go to the source file:
src/core/plbComplex.hh
at line 69, and replace “sqrModulus” by “sqrModulus()”. This will let you compile successfully. You will get a few warnings on the Mac (which we have fixed already), but you will have to wait for the next release for them to dissapear.
