Hi,
I’m trying to compile the cylinder2d showcase and get the following error after running make.
s/palabos-v1.5r1/externalLibraries /Applications/palabos-v1.5r1/src/io/multiBlockReader2D.cpp
/Applications/palabos-v1.5r1/src/io/mpiParallelIO.cpp:119:32: error: use of undeclared identifier ‘fseeko64’; did you mean ‘fseeko’?
int fSeekVal = fseeko64(fp, nextOffset, SEEK_SET);
^~~~~~~~
fseeko
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/include/stdio.h:420:6: note: ‘fseeko’ declared here
int fseeko(FILE * __stream, off_t __offset, int __whence);
^
/Applications/palabos-v1.5r1/src/io/mpiParallelIO.cpp:232:32: error: use of undeclared identifier ‘fseeko64’; did you mean ‘fseeko’?
int fSeekVal = fseeko64(fp, nextOffset, SEEK_SET);
^~~~~~~~
fseeko
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/include/stdio.h:420:6: note: ‘fseeko’ declared here
int fseeko(FILE * __stream, off_t __offset, int __whence);
^
2 errors generated.
scons: *** [/Applications/palabos-v1.5r1/src/io/mpiParallelIO.o] Error 1
/Applications/palabos-v1.5r1/src/io/multiBlockReader2D.cpp:360:9: error: use of undeclared identifier ‘fseeko64’; did you mean ‘fseeko’?
fseeko64(fp, pos, SEEK_SET);
^~~~~~~~
fseeko
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/include/stdio.h:420:6: note: ‘fseeko’ declared here
int fseeko(FILE * __stream, off_t __offset, int __whence);
^
1 error generated.
scons: *** [/Applications/palabos-v1.5r1/src/io/multiBlockReader2D.o] Error 1
scons: building terminated because of errors.
make: *** [compile] Error 2
Details:
Mac OS El Capitan version 10.11.6
Palabos-v1.5r1
Xcode v8.0
Here is the make file
##########################################################################
Makefile.
The present Makefile is a pure configuration file, in which
you can select compilation options. Compilation dependencies
are managed automatically through the Python library SConstruct.
If you don’t have Python, or if compilation doesn’t work for other
reasons, consult the Palabos user’s guide for instructions on manual
compilation.
##########################################################################
USE: multiple arguments are separated by spaces.
For example: projectFiles = file1.cpp file2.cpp
optimFlags = -O -finline-functions
#define USE_FILE32API
Leading directory of the Palabos source code
palabosRoot = …/…/…
Name of source files in current directory to compile and link with Palabos
projectFiles = cylinder2d.cpp
Set optimization flags on/off
optimize = true
Set debug mode and debug flags on/off
debug = false
Set profiling flags on/off
profile = false
Set MPI-parallel mode on/off (parallelism in cluster-like environment)
MPIparallel = false
Set SMP-parallel mode on/off (shared-memory parallelism)
SMPparallel = false
Decide whether to include calls to the POSIX API. On non-POSIX systems,
including Windows, this flag must be false, unless a POSIX environment is
emulated (such as with Cygwin).
usePOSIX = true
Path to external libraries (other than Palabos)
libraryPaths =
Path to inlude directories (other than Palabos)
includePaths =
Dynamic and static libraries (other than Palabos)
libraries =
Compiler to use without MPI parallelism
serialCXX = g++
Compiler to use with MPI parallelism
parallelCXX = mpicxx
General compiler flags (e.g. -Wall to turn on all warnings on g++)
compileFlags = -Wall -Wnon-virtual-dtor
General linker flags (don’t put library includes into this flag)
linkFlags =
Compiler flags to use when optimization mode is on
optimFlags = -O3
Compiler flags to use when debug mode is on
debugFlags = -g
Compiler flags to use when profile mode is on
profileFlags = -pg
##########################################################################
All code below this line is just about forwarding the options
to SConstruct. It is recommended not to modify anything there.
##########################################################################
SCons = $(palabosRoot)/scons/scons.py -j 6 -f $(palabosRoot)/SConstruct
SConsArgs = palabosRoot=$(palabosRoot)
projectFiles="$(projectFiles)"
optimize=$(optimize)
debug=$(debug)
profile=$(profile)
MPIparallel=$(MPIparallel)
SMPparallel=$(SMPparallel)
usePOSIX=$(usePOSIX)
serialCXX=$(serialCXX)
parallelCXX=$(parallelCXX)
compileFlags="$(compileFlags)"
linkFlags="$(linkFlags)"
optimFlags="$(optimFlags)"
debugFlags="$(debugFlags)"
profileFlags="$(profileFlags)"
libraryPaths="$(libraryPaths)"
includePaths="$(includePaths)"
libraries="$(libraries)"
compile:
python $(SCons) $(SConsArgs)
clean:
python $(SCons) -c $(SConsArgs)
/bin/rm -vf find $(palabosRoot) -name '*~'
Any suggestions? Thanks.